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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
43
December, 2017
40
May, 2021
24
February, 2018
21
August, 2021
Available data
143
bam
120
fastq
113
bigWig
108
bed narrowPeak
37
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
195
Homo sapiens
Biosample type
750
tissue
456
cell line
209
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
22
embryo
22
epithelium
15
liver
pancreas
Project
195
AMP
Genome assembly (visualization)
118
GRCh38
117
hg19
Lab
158
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
primitive gut cell
8
Posterior foregut
5
Hepatic endoderm
4
cardiomyocytes
3
endocrine cell
3
posterior foregut
3
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