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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
22
August, 2017
15
May, 2021
11
December, 2017
Available data
36
bam
36
bigWig
33
fastq
31
bed narrowPeak
6
bed bed3+
3
tagAlign
2
bigBed narrowPeak
Organism
48
Homo sapiens
Biosample type
360
cell line
72
tissue
48
in vitro differentiated cells
10
primary cell
Organ
22
connective tissue
3
embryo
3
epithelium
2
liver
pancreas
Project
48
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
36
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
definitive endodermal cell
2
hepatocyte
2
primitive gut cell
2
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