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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ATAC-seq
14
ChIP-seq
4
total RNA-seq
2
Capture-C
1
pCHi-C
Assay category
17
DNA accessibility
14
DNA binding
4
Transcription
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
2
control
Date released
14
August, 2017
13
February, 2023
4
August, 2021
4
February, 2021
2
October, 2019
1
August, 2018
Available data
bam
57
bigWig
55
fastq
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
38
Homo sapiens
Biosample type
49
tissue
38
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
38
connective tissue
1
adipose tissue
1
embryo
Project
38
AMP
Genome assembly (visualization)
19
hg19
Lab
34
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
38 results
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ATAC-seq
ChIP-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
8
14
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
white fat cell
1
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