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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
5
total RNA-seq
4
ATAC-seq
1
DNase-seq
Assay category
47
DNA binding
5
DNA accessibility
5
Transcription
Target of assay
25
histone
25
histone modification
22
transcription factor
12
broad histone mark
12
narrow histone mark
4
RNA binding protein
2
chromatin remodeller
Date released
48
August, 2017
4
February, 2021
2
August, 2021
2
October, 2019
1
May, 2021
Available data
59
bam
57
bigWig
55
fastq
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
57
Homo sapiens
Biosample type
481
tissue
57
in vitro differentiated cells
32
primary cell
Organ
57
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
57
AMP
Genome assembly (visualization)
57
hg19
53
GRCh38
Lab
55
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
47
4
3
1
cardiac fibroblast
1
osteoblast
1
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