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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
155
total RNA-seq
102
single cell RNA-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
279
DNA binding
259
Transcription
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
59
September, 2018
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
June, 2019
27
October, 2019
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
505
bigWig
495
bam
252
tsv
226
bed narrowPeak
217
fastq
100
tagAlign
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bedpe bed3+
Organism
573
Homo sapiens
Biosample type
2267
tissue
631
cell line
573
primary cell
351
in vitro differentiated cells
10
stem cell
Organ
212
epithelium
172
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
376
AMP
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
518
hg19
460
GRCh38
Lab
341
AMP-T2D consortium
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
39
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
award.project!
HPAP
BIOSAMPLE
ASSAY
573 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
CD8-positive, alpha-beta T cell
33
4
1
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
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