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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
258
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
41
August, 2017
31
July, 2019
31
June, 2019
25
October, 2019
20
February, 2021
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
505
bigWig
495
bam
349
fastq
258
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
779
Homo sapiens
Biosample type
2267
tissue
779
primary cell
573
cell line
351
in vitro differentiated cells
10
stem cell
Organ
309
epithelium
275
pancreas
31
connective tissue
24
kidney
24
vasculature
22
blood vessel
17
vein
13
musculature of body
11
liver
10
brain
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
355
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
500
hg19
442
GRCh38
Lab
320
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
779 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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