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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
247
total RNA-seq
184
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
433
Transcription
DNA accessibility
247
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
190
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
41
August, 2017
28
July, 2019
24
October, 2019
23
June, 2019
20
February, 2021
6
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
495
bigWig
463
bam
333
fastq
255
tsv
226
bed narrowPeak
98
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
765
Homo sapiens
Biosample type
2080
tissue
765
primary cell
548
cell line
314
in vitro differentiated cells
9
stem cell
Organ
294
epithelium
263
pancreas
28
connective tissue
26
vasculature
23
blood vessel
21
kidney
17
vein
11
musculature of body
10
brain
10
liver
8
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
341
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
511
hg19
457
GRCh38
Lab
309
AMP-T2D consortium
228
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
34
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
target.investigated_as!
control
BIOSAMPLE
ASSAY
765 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
7
52
12
31
1
Langerhans cell
85
pancreatic beta cell
7
21
12
16
1
exocrine cell
39
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