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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
74
May, 2022
72
May, 2021
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
27
September, 2018
20
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2019
3
October, 2022
2
October, 2018
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
Available data
258
bigWig
258
tsv
255
fastq
253
bam
93
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
521
Homo sapiens
Biosample type
1400
tissue
521
primary cell
153
in vitro differentiated cells
147
cell line
7
stem cell
Organ
223
epithelium
205
pancreas
19
connective tissue
9
kidney
7
brain
7
liver
7
vasculature
6
blood vessel
5
heart
3
musculature of body
2
adipose tissue
2
artery
2
vein
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
227
HPAP
181
AMP
112
T1D
1
ITG
Genome assembly (visualization)
274
hg19
253
GRCh38
Lab
227
Klaus Kaestner, Upenn
179
AMP-T2D consortium
114
Kyle Gaulton, UCSD
1
ITG
Audit category:
14
inconsistent ontology term
4
audit script error
assay_slims!
DNA binding
DNA accessibility
BIOSAMPLE
ASSAY
521 results
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total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
31
1
Langerhans cell
85
monocyte
54
1
1
pancreatic beta cell
21
12
16
1
exocrine cell
39
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