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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
128
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
197
DNA accessibility
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
85
May, 2021
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
18
July, 2019
15
July, 2018
10
April, 2018
10
June, 2019
8
January, 2021
6
November, 2020
3
August, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
1
September, 2018
Available data
217
bam
205
bigWig
154
tsv
130
fastq
73
zippedFastqFolder
29
bed narrowPeak
16
bed bed3+
13
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
495
Homo sapiens
Biosample type
1855
tissue
495
primary cell
194
in vitro differentiated cells
114
cell line
7
stem cell
Organ
epithelium
276
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
202
AMP
172
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
224
hg19
170
GRCh38
Lab
200
AMP-T2D consortium
172
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
25
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
epithelium
BIOSAMPLE
ASSAY
495 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
monocyte
54
15
1
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
CD4-positive, alpha-beta memory T cell
22
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