Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
72
ChIP-seq
56
snATAC-seq
17
pCHi-C
9
Hi-C
4
DNase-seq
1
FAIRE-seq
Assay category
212
DNA accessibility
184
Transcription
72
DNA binding
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
102
May, 2020
93
May, 2022
88
February, 2023
56
May, 2021
56
September, 2020
40
February, 2021
16
August, 2017
12
October, 2019
8
January, 2021
8
June, 2019
4
July, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
173
fastq
112
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
12
tsv
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
494
Homo sapiens
Biosample type
896
tissue
494
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
128
epithelium
107
pancreas
14
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
6
brain
6
connective tissue
5
kidney
2
heart
2
liver
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
267
HPAP
203
AMP
24
T1D
Genome assembly (visualization)
618
hg19
GRCh38
Lab
267
Klaus Kaestner, Upenn
168
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
16
inconsistent ontology term
assay_slims!
DNA methylation
assembly!
GRCh38
BIOSAMPLE
ASSAY
494 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
pancreatic beta cell
13
11
6
1
+ See 61 more…
See all biosamples
Download