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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
17
pCHi-C
10
Hi-C
2
DNase-seq
2
small RNA-seq
Assay category
436
Transcription
219
DNA accessibility
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
93
May, 2022
88
February, 2023
78
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
41
February, 2021
27
September, 2018
25
August, 2017
22
July, 2019
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
613
bigWig
609
bam
402
fastq
bed narrowPeak
264
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
735
Homo sapiens
Biosample type
1755
tissue
735
primary cell
262
in vitro differentiated cells
257
cell line
8
stem cell
Organ
247
epithelium
231
pancreas
21
connective tissue
15
vasculature
14
blood vessel
11
kidney
9
brain
9
vein
8
blood
8
bodily fluid
7
liver
6
heart
4
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
337
AMP
277
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
330
hg19
275
GRCh38
Lab
332
AMP-T2D consortium
277
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
735 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
pCHi-C
Hi-C
DNase-seq
small RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
6
1
monocyte
54
2
1
1
pancreatic beta cell
21
12
16
6
1
exocrine cell
39
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