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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
30
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
228
DNA accessibility
188
Transcription
185
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
205
May, 2021
147
May, 2020
93
May, 2022
55
June, 2019
34
October, 2019
22
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
613
bigWig
609
bam
fastq
295
bed narrowPeak
264
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
628
Homo sapiens
Biosample type
2335
tissue
628
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
121
epithelium
47
pancreas
35
connective tissue
33
kidney
30
vasculature
28
blood vessel
22
vein
13
liver
13
musculature of body
12
heart
11
brain
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
309
AMP
204
T1D
114
HPAP
1
ITG
Genome assembly (visualization)
393
hg19
307
GRCh38
Lab
274
AMP-T2D consortium
239
Kyle Gaulton, UCSD
114
Klaus Kaestner, Upenn
1
ITG
Audit category:
45
inconsistent ontology term
4
audit script error
assay_slims!
DNA methylation
files.file_type!
fastq
BIOSAMPLE
ASSAY
628 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
15
54
1
Langerhans cell
51
21
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
pancreatic alpha cell
22
1
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