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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
288
DNA accessibility
274
DNA binding
58
DNA methylation
7
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
55
June, 2019
54
August, 2017
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
354
bigWig
352
bam
290
bed narrowPeak
156
fastq
108
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
cool
1
bed bed3
1
tar
Organism
644
Homo sapiens
Biosample type
1544
tissue
644
primary cell
521
cell line
239
in vitro differentiated cells
6
stem cell
Organ
236
epithelium
184
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
391
AMP
144
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
366
hg19
279
GRCh38
Lab
358
AMP-T2D consortium
144
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
28
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
audit.WARNING.category!
inconsistent control read length
files.file_type!
cool
BIOSAMPLE
ASSAY
644 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
11
35
31
pancreatic beta cell
11
23
16
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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