Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
151
ATAC-seq
31
DNase-seq
10
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
195
DNA binding
183
DNA accessibility
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
59
August, 2017
55
June, 2019
51
May, 2021
46
September, 2018
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
2
February, 2021
2
November, 2020
1
March, 2020
Available data
273
bam
265
bigWig
211
bed narrowPeak
118
fastq
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
396
Homo sapiens
Biosample type
1476
tissue
540
cell line
396
primary cell
256
in vitro differentiated cells
8
stem cell
Organ
144
epithelium
92
pancreas
35
vasculature
30
kidney
29
blood vessel
23
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
Project
396
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
287
hg19
189
GRCh38
Lab
363
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
396 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
+ See 61 more…
See all biosamples
Download