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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
29
DNase-seq
23
ATAC-seq
1
FAIRE-seq
Assay category
57
DNA binding
53
DNA accessibility
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
February, 2021
1
November, 2020
Available data
359
bigWig
357
bam
295
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
110
Homo sapiens
Biosample type
566
tissue
356
cell line
110
primary cell
22
in vitro differentiated cells
Organ
61
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
connective tissue
16
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
110
AMP
Genome assembly (visualization)
106
GRCh38
103
hg19
Lab
110
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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