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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
193
ATAC-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
278
DNA accessibility
274
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
47
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
12
February, 2023
12
July, 2019
9
November, 2017
8
January, 2021
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
349
bam
346
bigWig
289
bed narrowPeak
154
fastq
103
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
636
Homo sapiens
Biosample type
1346
tissue
636
primary cell
533
cell line
256
in vitro differentiated cells
8
stem cell
Organ
236
epithelium
184
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
387
AMP
140
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
368
hg19
271
GRCh38
Lab
354
AMP-T2D consortium
141
Kyle Gaulton, UCSD
140
Klaus Kaestner, Upenn
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
August, 2020
organ_slims!
heart
BIOSAMPLE
ASSAY
636 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
30
31
1
pancreatic beta cell
13
21
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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