Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
91
ATAC-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
Transcription
111
DNA accessibility
107
DNA binding
53
DNA methylation
8
3D chromatin structure
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
26
control
6
RNA binding protein
6
transcription factor
3
nucleotide modification
Date released
80
May, 2022
35
September, 2018
32
October, 2019
29
August, 2017
20
June, 2019
17
May, 2021
15
November, 2019
8
July, 2019
7
August, 2020
6
August, 2021
6
February, 2021
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
4
March, 2020
3
October, 2022
3
September, 2020
1
February, 2023
Available data
149
bam
137
bigWig
121
bed narrowPeak
91
fastq
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tsv
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
287
Homo sapiens
Biosample type
243
primary cell
45
cell line
22
in vitro differentiated cells
13
tissue
Organ
396
liver
288
epithelium
250
pancreas
69
blood
69
bodily fluid
49
vasculature
45
kidney
43
blood vessel
24
connective tissue
23
heart
22
vein
18
brain
14
artery
12
musculature of body
5
eye
1
bone element
1
bone marrow
1
mammary gland
Project
187
AMP
99
HPAP
2
T1D
Genome assembly (visualization)
135
hg19
130
GRCh38
Lab
183
AMP-T2D consortium
99
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
52
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
288 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
endothelial cell of umbilical vein
17
2
2
1
pancreatic acinar cell
8
9
1
pancreatic ductal cell
13
4
+ See 14 more…
cell line
EndoC_BH1
15
19
1
6
2
1
glomerular visceral epithelial cell
1
See all biosamples
Download