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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
47
WGBS
26
ChIP-seq
7
Hi-C
6
RRBS
2
DNase-seq
Assay category
Transcription
53
DNA methylation
51
DNA accessibility
26
DNA binding
7
3D chromatin structure
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
12
August, 2017
11
October, 2019
8
July, 2019
7
August, 2020
6
February, 2021
3
October, 2022
3
September, 2020
2
June, 2019
2
November, 2017
1
August, 2021
1
March, 2020
1
May, 2019
Available data
132
bam
121
bigWig
bed narrowPeak
91
fastq
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
137
Homo sapiens
Biosample type
137
primary cell
30
cell line
4
in vitro differentiated cells
1
tissue
Organ
137
epithelium
123
pancreas
14
vasculature
12
blood vessel
9
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
99
HPAP
38
AMP
Genome assembly (visualization)
17
hg19
10
GRCh38
Lab
99
Klaus Kaestner, Upenn
38
AMP-T2D consortium
Audit category:
4
audit script error
3
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
137 results
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ATAC-seq
WGBS
ChIP-seq
Hi-C
RRBS
DNase-seq
primary cell
pancreatic alpha cell
29
31
6
1
pancreatic beta cell
16
16
6
1
endothelial cell of umbilical vein
7
2
pancreatic acinar cell
4
1
epithelial cell of proximal tubule
2
1
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