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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
WGBS
40
ATAC-seq
22
ChIP-seq
6
RRBS
5
Hi-C
2
DNase-seq
Assay category
53
DNA methylation
Transcription
42
DNA accessibility
22
DNA binding
5
3D chromatin structure
Target of assay
19
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
12
August, 2017
10
October, 2019
6
February, 2021
6
July, 2019
3
October, 2022
2
June, 2019
1
August, 2021
1
March, 2020
1
May, 2019
Available data
132
bam
bigWig
106
bed narrowPeak
91
fastq
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
122
Homo sapiens
Biosample type
122
primary cell
29
cell line
13
tissue
4
in vitro differentiated cells
Organ
122
epithelium
101
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
89
HPAP
33
AMP
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
89
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
4
audit script error
4
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bigWig
BIOSAMPLE
ASSAY
122 results
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WGBS
ATAC-seq
ChIP-seq
RRBS
Hi-C
DNase-seq
primary cell
pancreatic alpha cell
31
22
6
1
pancreatic beta cell
16
13
6
1
endothelial cell of umbilical vein
5
2
pancreatic acinar cell
4
1
epithelial cell of proximal tubule
2
1
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