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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
72
ATAC-seq
47
WGBS
17
DNase-seq
7
Hi-C
5
RRBS
1
FAIRE-seq
Assay category
Transcription
90
DNA accessibility
89
DNA binding
52
DNA methylation
7
3D chromatin structure
Target of assay
65
histone
65
histone modification
34
narrow histone mark
31
broad histone mark
20
control
4
RNA binding protein
4
transcription factor
Date released
80
May, 2022
35
September, 2018
31
October, 2019
29
August, 2017
16
June, 2019
7
August, 2020
7
July, 2019
6
February, 2021
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
1
March, 2020
Available data
128
bam
118
bigWig
103
bed narrowPeak
91
fastq
80
zippedFastqFolder
58
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
6
tsv
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
238
Homo sapiens
Biosample type
238
primary cell
45
cell line
22
in vitro differentiated cells
1
tissue
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
eye
1
bone element
1
bone marrow
Project
139
AMP
99
HPAP
Genome assembly (visualization)
113
hg19
112
GRCh38
Lab
139
AMP-T2D consortium
99
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
organ_slims!
eye
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
endothelial cell of umbilical vein
17
2
2
1
pancreatic acinar cell
8
9
1
pancreatic ductal cell
13
4
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