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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
Assay category
Transcription
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
138
May, 2021
54
August, 2017
41
May, 2022
32
September, 2018
31
June, 2019
25
October, 2019
13
July, 2019
9
November, 2017
7
February, 2021
5
May, 2019
4
August, 2021
3
October, 2022
1
March, 2020
1
March, 2023
Available data
251
bigWig
243
bam
226
bed narrowPeak
101
fastq
100
tagAlign
57
bigBed narrowPeak
41
zippedFastqFolder
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
6
tsv
4
bedpe bed3+
4
hdf5
3
cool
Organism
364
Homo sapiens
Biosample type
1072
tissue
514
cell line
364
primary cell
213
in vitro differentiated cells
8
stem cell
Organ
152
epithelium
120
pancreas
28
vasculature
24
blood vessel
19
vein
18
kidney
16
connective tissue
13
brain
11
musculature of body
6
heart
6
liver
4
eye
1
bone element
1
bone marrow
Project
213
AMP
100
T1D
50
HPAP
1
ITG
Genome assembly (visualization)
267
hg19
208
GRCh38
Lab
180
AMP-T2D consortium
133
Kyle Gaulton, UCSD
50
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
DNA accessibility
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNAme array
primary cell
monocyte
85
1
1
pancreatic alpha cell
13
31
1
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
13
16
1
pancreatic endocrine cell
23
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