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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
Transcription
117
DNA binding
105
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
133
May, 2021
101
May, 2022
33
February, 2021
8
January, 2021
7
August, 2020
3
October, 2022
3
September, 2020
1
March, 2023
Available data
127
bigWig
114
bed narrowPeak
101
zippedFastqFolder
84
bam
84
tagAlign
43
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
289
Homo sapiens
Biosample type
289
primary cell
202
tissue
49
in vitro differentiated cells
36
cell line
Organ
99
epithelium
99
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
147
HPAP
108
T1D
33
AMP
1
ITG
Genome assembly (visualization)
120
hg19
95
GRCh38
Lab
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
289 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
16
16
1
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