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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
ATAC-seq
56
snATAC-seq
31
DNase-seq
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2021
100
May, 2020
60
May, 2022
58
August, 2017
55
June, 2019
46
September, 2018
31
October, 2019
28
February, 2021
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
2
November, 2020
Available data
356
bam
355
bigWig
295
bed narrowPeak
154
fastq
109
bigBed narrowPeak
100
tagAlign
60
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
30
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
567
Homo sapiens
Biosample type
1337
tissue
567
primary cell
515
cell line
241
in vitro differentiated cells
3
stem cell
Organ
183
epithelium
141
pancreas
30
vasculature
27
kidney
25
blood vessel
20
connective tissue
20
vein
14
brain
11
musculature of body
8
blood
8
bodily fluid
8
heart
7
liver
4
eye
Project
378
AMP
97
HPAP
92
T1D
Genome assembly (visualization)
354
hg19
283
GRCh38
Lab
345
AMP-T2D consortium
125
Kyle Gaulton, UCSD
97
Klaus Kaestner, Upenn
Audit category:
40
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
567 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
85
15
Langerhans cell
48
pancreatic alpha cell
13
35
pancreatic beta cell
13
23
CD8-positive, alpha-beta T cell
33
2
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