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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
200
ATAC-seq
56
snATAC-seq
31
DNase-seq
1
FAIRE-seq
Assay category
433
Transcription
288
DNA accessibility
247
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
131
May, 2021
100
May, 2020
60
May, 2022
47
June, 2019
46
September, 2018
45
August, 2017
28
February, 2021
28
October, 2019
12
February, 2023
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
3
September, 2020
2
November, 2020
Available data
348
bigWig
327
bam
295
bed narrowPeak
138
fastq
109
bigBed narrowPeak
98
tagAlign
60
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
30
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
535
Homo sapiens
Biosample type
1192
tissue
535
primary cell
435
cell line
204
in vitro differentiated cells
2
stem cell
Organ
162
epithelium
129
pancreas
26
vasculature
24
kidney
22
blood vessel
18
vein
17
connective tissue
11
brain
9
musculature of body
8
blood
8
bodily fluid
6
heart
6
liver
3
eye
Project
346
AMP
97
HPAP
92
T1D
Genome assembly (visualization)
347
hg19
283
GRCh38
Lab
316
AMP-T2D consortium
122
Kyle Gaulton, UCSD
97
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
535 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
85
15
Langerhans cell
48
pancreatic alpha cell
7
35
CD8-positive, alpha-beta T cell
30
2
pancreatic beta cell
7
23
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