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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ATAC-seq
56
snATAC-seq
33
DNase-seq
1
FAIRE-seq
Assay category
763
DNA binding
551
Transcription
319
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
60
May, 2022
37
February, 2021
29
May, 2021
24
June, 2019
14
September, 2018
12
February, 2023
9
October, 2019
8
January, 2021
7
August, 2020
5
August, 2017
5
September, 2017
3
September, 2020
2
March, 2020
2
November, 2020
1
January, 2018
1
November, 2019
Available data
126
bam
113
bigWig
81
bed narrowPeak
60
fastq
60
zippedFastqFolder
54
bigBed narrowPeak
29
bed broadPeak
29
bigBed broadPeak
28
bed bed3+
13
tsv
2
bed bed3
1
tar
Organism
319
Homo sapiens
Biosample type
470
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
111
epithelium
91
pancreas
15
vasculature
13
blood vessel
13
kidney
11
heart
9
blood
9
bodily fluid
8
artery
8
connective tissue
5
brain
4
liver
3
vein
1
eye
1
musculature of body
Project
214
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
122
hg19
88
GRCh38
Lab
214
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
27
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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