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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
56
snATAC-seq
2
DNase-seq
Assay category
182
Transcription
180
DNA accessibility
58
DNA methylation
32
DNA binding
6
3D chromatin structure
Date released
60
May, 2022
55
May, 2020
27
February, 2021
13
May, 2021
12
February, 2023
8
January, 2021
4
October, 2019
1
November, 2020
Available data
114
bam
bigWig
69
bed narrowPeak
60
fastq
60
zippedFastqFolder
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
bed bed3
tar
Organism
180
Homo sapiens
Biosample type
246
tissue
180
primary cell
30
in vitro differentiated cells
26
cell line
Organ
42
epithelium
39
pancreas
8
blood
8
bodily fluid
2
kidney
1
connective tissue
1
liver
Project
87
HPAP
85
AMP
8
T1D
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
87
Klaus Kaestner, Upenn
85
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
8
inconsistent ontology term
files.file_type!
tar
bigWig
BIOSAMPLE
ASSAY
180 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
monocyte
13
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