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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
8
snATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
276
DNA binding
257
Transcription
164
DNA accessibility
11
DNA methylation
3
3D chromatin structure
Date released
100
May, 2020
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
5
August, 2017
5
October, 2019
5
September, 2017
1
February, 2021
1
November, 2020
Available data
114
bam
98
bigWig
69
bed narrowPeak
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
bed bed3+
23
fastq
12
tsv
1
bed bed3
1
tar
Organism
164
Homo sapiens
Biosample type
293
tissue
164
primary cell
39
in vitro differentiated cells
30
cell line
Organ
26
epithelium
22
pancreas
8
blood
8
bodily fluid
2
connective tissue
2
kidney
1
blood vessel
1
liver
1
vasculature
1
vein
Project
156
AMP
8
T1D
Genome assembly (visualization)
87
hg19
39
GRCh38
Lab
156
AMP-T2D consortium
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
164 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
peripheral blood mononuclear cell
8
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