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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ATAC-seq
31
DNase-seq
8
snATAC-seq
1
FAIRE-seq
Assay category
204
Transcription
178
DNA accessibility
158
DNA binding
10
DNA methylation
7
3D chromatin structure
Date released
100
May, 2020
24
June, 2019
14
September, 2018
May, 2021
12
February, 2023
8
January, 2021
7
October, 2019
5
August, 2017
5
September, 2017
2
November, 2020
1
February, 2021
Available data
101
bam
98
bigWig
56
bed narrowPeak
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
23
fastq
12
tsv
1
bed bed3
1
tar
Organism
178
Homo sapiens
Biosample type
470
tissue
178
primary cell
38
in vitro differentiated cells
15
cell line
Organ
42
epithelium
22
pancreas
12
kidney
8
blood
8
bodily fluid
8
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
170
AMP
8
T1D
Genome assembly (visualization)
94
hg19
53
GRCh38
Lab
170
AMP-T2D consortium
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
month_released!
May, 2021
BIOSAMPLE
ASSAY
178 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
peripheral blood mononuclear cell
8
pancreatic beta cell
7
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