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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ATAC-seq
56
snATAC-seq
31
DNase-seq
1
FAIRE-seq
Assay category
436
Transcription
281
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
August, 2020
7
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
114
bam
101
bigWig
69
bed narrowPeak
60
zippedFastqFolder
53
fastq
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
281
Homo sapiens
Biosample type
470
tissue
281
primary cell
43
in vitro differentiated cells
31
cell line
Organ
84
epithelium
64
pancreas
12
kidney
8
blood
8
bodily fluid
8
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
183
AMP
90
HPAP
8
T1D
Genome assembly (visualization)
107
hg19
69
GRCh38
Lab
183
AMP-T2D consortium
90
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
15
inconsistent ontology term
month_released!
August, 2020
BIOSAMPLE
ASSAY
281 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
30
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
21
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