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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ATAC-seq
56
snATAC-seq
7
DNase-seq
1
FAIRE-seq
Assay category
436
Transcription
257
DNA accessibility
248
DNA binding
58
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
August, 2020
7
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
90
bam
77
bigWig
60
zippedFastqFolder
53
fastq
45
bed narrowPeak
28
bigBed narrowPeak
12
tsv
4
bed broadPeak
4
bigBed broadPeak
3
bed bed3+
1
bed bed3
1
tar
Organism
257
Homo sapiens
Biosample type
307
tissue
257
primary cell
43
in vitro differentiated cells
31
cell line
Organ
70
epithelium
64
pancreas
8
blood
8
bodily fluid
3
blood vessel
3
connective tissue
3
vasculature
3
vein
2
kidney
1
liver
Project
159
AMP
90
HPAP
8
T1D
Genome assembly (visualization)
90
hg19
45
GRCh38
Lab
159
AMP-T2D consortium
90
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
12
inconsistent ontology term
month_released!
August, 2020
June, 2019
BIOSAMPLE
ASSAY
257 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
30
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
21
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