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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ATAC-seq
30
DNase-seq
29
snATAC-seq
1
FAIRE-seq
Assay category
419
Transcription
279
DNA binding
258
DNA accessibility
52
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
February, 2021
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
November, 2020
Available data
111
bam
106
bigWig
66
bed narrowPeak
60
zippedFastqFolder
51
bigBed narrowPeak
33
fastq
27
bed broadPeak
27
bigBed broadPeak
26
bed bed3+
12
tsv
1
tar
Organism
258
Homo sapiens
Biosample type
462
tissue
258
primary cell
39
in vitro differentiated cells
22
cell line
Organ
91
epithelium
71
pancreas
12
kidney
8
blood
8
bodily fluid
7
vasculature
5
blood vessel
5
brain
5
connective tissue
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
180
AMP
70
HPAP
8
T1D
Genome assembly (visualization)
104
hg19
73
GRCh38
Lab
180
AMP-T2D consortium
70
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
month_released!
November, 2020
February, 2021
BIOSAMPLE
ASSAY
258 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
Langerhans cell
21
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