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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
56
snATAC-seq
26
DNase-seq
1
FAIRE-seq
Assay category
433
Transcription
283
DNA accessibility
270
DNA binding
57
DNA methylation
7
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
19
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
109
bam
103
bigWig
64
bed narrowPeak
60
fastq
60
zippedFastqFolder
47
bigBed narrowPeak
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
283
Homo sapiens
Biosample type
438
tissue
283
primary cell
43
in vitro differentiated cells
31
cell line
Organ
91
epithelium
71
pancreas
12
kidney
8
blood
8
bodily fluid
8
connective tissue
7
vasculature
5
blood vessel
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
178
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
102
hg19
71
GRCh38
Lab
178
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
15
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
283 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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