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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ATAC-seq
56
snATAC-seq
13
DNase-seq
Assay category
273
Transcription
197
DNA accessibility
187
DNA binding
5
DNA methylation
3
3D chromatin structure
Date released
100
May, 2020
28
February, 2021
21
May, 2022
13
May, 2021
12
February, 2023
10
June, 2019
8
January, 2021
2
August, 2017
2
November, 2020
1
October, 2019
Available data
74
bam
59
bigWig
29
bed narrowPeak
28
fastq
21
zippedFastqFolder
13
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
12
tsv
11
bed bed3+
1
bed bed3
Organism
197
Homo sapiens
Biosample type
458
tissue
197
primary cell
43
in vitro differentiated cells
11
cell line
Organ
epithelium
71
pancreas
12
kidney
8
blood
8
bodily fluid
8
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
141
AMP
48
HPAP
8
T1D
Genome assembly (visualization)
73
hg19
27
GRCh38
Lab
141
AMP-T2D consortium
48
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
13
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
197 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
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