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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
56
snATAC-seq
30
DNase-seq
10
Hi-C
1
FAIRE-seq
Assay category
434
Transcription
287
DNA accessibility
269
DNA binding
57
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
23
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
8
October, 2019
7
August, 2020
5
August, 2017
5
September, 2017
4
July, 2019
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
113
bam
111
bigWig
68
bed narrowPeak
60
fastq
60
zippedFastqFolder
51
bigBed narrowPeak
30
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
12
tsv
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
297
Homo sapiens
Biosample type
446
tissue
297
primary cell
47
in vitro differentiated cells
35
cell line
Organ
98
epithelium
74
pancreas
12
kidney
11
vasculature
9
blood vessel
9
connective tissue
8
blood
8
bodily fluid
8
brain
5
vein
4
liver
3
heart
1
eye
musculature of body
Project
188
AMP
100
HPAP
8
T1D
1
ITG
Genome assembly (visualization)
115
hg19
76
GRCh38
Lab
188
AMP-T2D consortium
100
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
15
inconsistent ontology term
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
297 results
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ATAC-seq
snATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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