Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
360
total RNA-seq
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
763
DNA binding
551
Transcription
90
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
118
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
324
November, 2017
198
May, 2021
134
February, 2021
95
May, 2022
82
February, 2023
62
November, 2018
62
October, 2019
59
September, 2018
56
August, 2017
56
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
48
May, 2020
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
15
November, 2019
11
November, 2020
10
March, 2020
8
January, 2021
5
December, 2019
5
May, 2019
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
Available data
1097
bam
1054
bigWig
804
fastq
650
bed narrowPeak
442
bigBed narrowPeak
376
tsv
120
tagAlign
114
zippedFastqFolder
108
bed broadPeak
108
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
csv
1
txt
1
vcf
Organism
1517
Homo sapiens
Biosample type
2477
tissue
888
primary cell
633
cell line
352
in vitro differentiated cells
10
stem cell
Organ
413
liver
394
epithelium
348
pancreas
95
vasculature
89
blood vessel
71
heart
68
blood
68
bodily fluid
60
artery
55
kidney
37
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1030
AMP
275
HPAP
213
T1D
2
community
1
ITG
Genome assembly (visualization)
1061
hg19
941
GRCh38
Lab
959
AMP-T2D consortium
275
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
115
inconsistent ontology term
31
audit script error
1
inconsistent control
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
1521 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
shRNA RNA-seq
...and 2 more
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
+ See 87 more…
cell line
HepG2
378
14
1
2
2
2
EndoC_BH1
15
33
1
6
3
2
2
1
GM12878
60
smooth muscle cell of the coronary artery
6
52
Panc1
13
1
1
+ See 14 more…
See all biosamples
Download