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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
237
total RNA-seq
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
267
DNA binding
82
DNA accessibility
57
DNA methylation
9
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
192
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
47
May, 2020
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
32
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
504
bigWig
491
bam
374
fastq
243
tsv
241
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
72
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
851
Homo sapiens
Biosample type
1936
tissue
851
primary cell
633
cell line
272
in vitro differentiated cells
9
stem cell
Organ
334
epithelium
275
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
372
AMP
275
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
512
hg19
457
GRCh38
Lab
337
AMP-T2D consortium
275
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
851 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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