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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
247
total RNA-seq
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
278
DNA binding
88
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
September, 2020
55
August, 2017
55
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
32
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
534
bigWig
524
bam
376
fastq
258
tsv
255
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
887
Homo sapiens
Biosample type
2475
tissue
887
primary cell
603
cell line
349
in vitro differentiated cells
10
stem cell
Organ
334
epithelium
275
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
407
AMP
275
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
543
hg19
486
GRCh38
Lab
372
AMP-T2D consortium
275
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
887 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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