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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
31
DNase-seq
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
261
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
21
February, 2021
9
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
366
bigWig
288
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
778
Homo sapiens
Biosample type
1861
tissue
778
primary cell
194
in vitro differentiated cells
178
cell line
7
stem cell
Organ
310
epithelium
273
pancreas
27
connective tissue
21
kidney
13
vasculature
12
brain
10
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
4
musculature of body
4
vein
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
363
AMP
294
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
377
hg19
329
GRCh38
Lab
361
AMP-T2D consortium
294
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
29
inconsistent ontology term
assay_title!
ChIP-seq
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
778 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
21
23
12
16
monocyte
54
15
1
1
exocrine cell
39
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