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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
ChIP-seq
31
DNase-seq
31
total RNA-seq
28
single cell RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
DNA accessibility
61
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
102
May, 2020
31
July, 2019
24
June, 2019
18
May, 2021
12
February, 2023
11
July, 2018
10
April, 2018
10
October, 2019
6
November, 2020
5
December, 2019
3
August, 2017
3
February, 2021
2
June, 2018
1
March, 2020
1
November, 2018
1
September, 2018
Available data
147
bam
136
bigWig
66
tsv
47
bed narrowPeak
34
bed bed3+
30
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
fastq
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
240
Homo sapiens
Biosample type
1415
tissue
240
primary cell
196
in vitro differentiated cells
107
cell line
5
stem cell
Organ
162
epithelium
pancreas
26
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
240
AMP
172
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
158
hg19
98
GRCh38
Lab
238
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
240 results
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ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
monocyte
15
1
1
macrophage
11
osteoblast
2
1
5
1
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