Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
ChIP-seq
149
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
280
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
16
May, 2021
10
October, 2019
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
315
fastq
271
bam
268
bigWig
174
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
32
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
687
Homo sapiens
Biosample type
1818
tissue
687
primary cell
186
in vitro differentiated cells
173
cell line
7
stem cell
Organ
314
epithelium
276
pancreas
26
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
362
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
283
hg19
233
GRCh38
Lab
362
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
24
inconsistent ontology term
assay_title!
ChIP-seq
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
687 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
52
31
1
pancreatic beta cell
23
12
21
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
1
+ See 84 more…
See all biosamples
Download