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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
Hi-C
8
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
FAIRE-seq
Assay category
425
Transcription
251
DNA accessibility
245
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
217
histone
217
histone modification
114
broad histone mark
103
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
31
October, 2019
June, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
548
bigWig
533
bam
402
fastq
253
tsv
243
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
59
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
1003
Homo sapiens
Biosample type
2520
tissue
1003
primary cell
570
cell line
279
in vitro differentiated cells
9
stem cell
Organ
379
epithelium
341
pancreas
32
vasculature
28
blood vessel
21
connective tissue
21
vein
19
kidney
16
brain
11
liver
8
blood
8
bodily fluid
4
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
479
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
566
hg19
474
GRCh38
Lab
444
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
month_released!
June, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
1003 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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