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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
58
DNA methylation
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
27
July, 2019
24
June, 2019
9
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
367
bam
362
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
30
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
799
Homo sapiens
Biosample type
1854
tissue
799
primary cell
192
in vitro differentiated cells
174
cell line
7
stem cell
Organ
307
epithelium
273
pancreas
26
connective tissue
21
kidney
10
vasculature
9
brain
9
liver
8
blood
8
bodily fluid
8
heart
7
blood vessel
4
musculature of body
3
vein
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
358
AMP
321
HPAP
120
T1D
Genome assembly (visualization)
372
hg19
328
GRCh38
Lab
356
AMP-T2D consortium
321
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
Audit category:
29
inconsistent ontology term
27
audit script error
assay_title!
Hi-C
ChIP-seq
BIOSAMPLE
ASSAY
799 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
pancreatic beta cell
21
23
12
16
monocyte
54
15
1
1
exocrine cell
39
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