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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
184
Transcription
174
DNA accessibility
58
DNA methylation
37
DNA binding
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
9
July, 2019
8
January, 2021
7
August, 2020
2
October, 2019
1
August, 2017
1
November, 2018
1
September, 2018
Available data
bam
609
bigWig
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
469
Homo sapiens
Biosample type
814
tissue
469
primary cell
99
in vitro differentiated cells
76
cell line
7
stem cell
Organ
157
epithelium
149
pancreas
8
blood
8
bodily fluid
5
kidney
2
connective tissue
1
bone element
1
bone marrow
1
brain
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
321
HPAP
124
AMP
24
T1D
Genome assembly (visualization)
45
hg19
10
GRCh38
Lab
321
Klaus Kaestner, Upenn
89
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
27
audit script error
9
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
bam
BIOSAMPLE
ASSAY
469 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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