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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
162
ChIP-seq
149
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
280
DNA accessibility
162
DNA binding
58
DNA methylation
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
429
bam
409
fastq
394
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
839
Homo sapiens
Biosample type
2669
tissue
839
primary cell
653
cell line
343
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
343
pancreas
37
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
518
AMP
321
HPAP
Genome assembly (visualization)
404
hg19
355
GRCh38
Lab
518
AMP-T2D consortium
321
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
839 results
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Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
exocrine cell
39
pancreatic acinar cell
9
12
8
4
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