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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
232
DNA accessibility
189
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
113
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
20
February, 2021
18
July, 2019
12
February, 2023
9
November, 2017
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
461
bigWig
459
bam
295
bed narrowPeak
262
fastq
132
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
785
Homo sapiens
Biosample type
1672
tissue
785
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
29
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
500
AMP
184
HPAP
100
T1D
1
ITG
Genome assembly (visualization)
476
hg19
386
GRCh38
Lab
467
AMP-T2D consortium
184
Klaus Kaestner, Upenn
133
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
total RNA-seq
BIOSAMPLE
ASSAY
785 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
Langerhans cell
85
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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