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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
275
DNA binding
229
DNA accessibility
57
DNA methylation
9
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
21
February, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
602
bigWig
597
bam
382
fastq
289
bed narrowPeak
265
tsv
132
zippedFastqFolder
107
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1018
Homo sapiens
Biosample type
2348
tissue
1018
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
545
AMP
276
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
615
hg19
525
GRCh38
Lab
510
AMP-T2D consortium
276
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
organ_slims!
liver
BIOSAMPLE
ASSAY
1018 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
33
4
2
1
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