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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
DNA binding
189
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
134
May, 2022
100
May, 2020
48
July, 2018
47
February, 2021
43
April, 2018
43
September, 2020
30
May, 2021
24
June, 2019
18
July, 2019
15
September, 2018
12
February, 2023
8
January, 2021
8
October, 2019
7
August, 2020
6
August, 2017
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
217
bam
214
bigWig
195
fastq
153
zippedFastqFolder
120
tsv
69
bed narrowPeak
52
bigBed narrowPeak
32
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
562
Homo sapiens
Biosample type
833
tissue
562
primary cell
65
cell line
60
in vitro differentiated cells
7
stem cell
Organ
221
epithelium
195
pancreas
17
connective tissue
15
kidney
12
brain
12
vasculature
9
blood vessel
8
blood
8
bodily fluid
5
liver
5
vein
4
heart
3
musculature of body
2
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
305
AMP
232
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
229
hg19
179
GRCh38
Lab
305
AMP-T2D consortium
232
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
25
inconsistent ontology term
assay_title!
total RNA-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
562 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
31
1
pancreatic beta cell
23
12
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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