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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
162
DNA binding
104
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
September, 2018
43
April, 2018
32
October, 2019
18
July, 2019
18
May, 2021
12
February, 2023
9
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
February, 2021
2
November, 2020
1
March, 2020
1
November, 2018
Available data
375
bam
334
bigWig
212
fastq
181
bed narrowPeak
114
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
467
Homo sapiens
Biosample type
1470
tissue
511
cell line
467
primary cell
209
in vitro differentiated cells
8
stem cell
Organ
214
epithelium
166
pancreas
35
vasculature
30
kidney
29
blood vessel
28
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
5
eye
1
adipose tissue
Project
467
AMP
Genome assembly (visualization)
356
hg19
291
GRCh38
Lab
467
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
467 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
pancreatic alpha cell
13
6
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
5
12
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
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