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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
70
ChIP-seq
47
WGBS
3
Hi-C
Assay category
74
Transcription
71
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
46
September, 2018
41
August, 2017
37
July, 2018
33
April, 2018
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
3
September, 2020
1
June, 2018
Available data
177
fastq
166
bam
164
bigWig
80
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
265
Homo sapiens
Biosample type
265
primary cell
216
tissue
59
cell line
3
in vitro differentiated cells
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
29
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
166
AMP
99
HPAP
Genome assembly (visualization)
164
GRCh38
157
hg19
Lab
166
AMP-T2D consortium
99
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
265 results
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Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
12
35
13
31
1
pancreatic beta cell
12
23
13
16
1
pancreatic acinar cell
12
9
8
1
pancreatic ductal cell
10
4
13
pancreatic endocrine cell
23
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