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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
199
DNA accessibility
Date released
100
May, 2020
39
May, 2022
14
September, 2018
13
May, 2021
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
October, 2019
1
November, 2020
Available data
84
bam
78
bigWig
39
bed narrowPeak
39
zippedFastqFolder
32
fastq
22
bigBed narrowPeak
12
tsv
bed bed3
Organism
199
Homo sapiens
Biosample type
255
tissue
199
primary cell
37
in vitro differentiated cells
28
cell line
Organ
72
epithelium
71
pancreas
1
connective tissue
1
liver
Project
150
AMP
49
HPAP
Genome assembly (visualization)
83
hg19
48
GRCh38
Lab
150
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
12
inconsistent ontology term
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
199 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
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